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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19459076_19460717_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19459076 - 19460717
Intron Length:
1642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
AATGTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAA
U12 Branch Point Sequence:
TTGTCTGCAATG
Flanking Amino Acid:
KPEVSCYENIRSCARGALAL
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
53.2
0.08
1.4
65.6
41.4
Major PPT
71.8
0.49
0.9
62.6
43.4
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
47.4
-0.3
2.2
58.84
43.8

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031433
19402813 - 19461477
58665
ENSAPLT00000025953
19387225 - 19462856
75632
ENSAPLT00000048195
19293286 - 19461477
168192
ENSAPLT00000021835
19385603 - 19462856
77254
ENSAPLT00000046060
19293286 - 19461477
168192
ENSAPLT00000003725
19296760 - 19461477
164718
ENSAPLT00000036545
19385603 - 19462856
77254