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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19460887_19461414_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19460887 - 19461414
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATTCTTTATTT
Flanking Amino Acid:
FIFLCVLSRKIQEEYYRLFK
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
100
1.24
0.5
100
0
Major PPT
85.4
0.8
0.8
82.7
32.9
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
66.7
0.6
1.5
79.34
37

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021835
19385603 - 19462856
77254
ENSAPLT00000046060
19293286 - 19461477
168192
ENSAPLT00000003725
19296760 - 19461477
164718
ENSAPLT00000036545
19385603 - 19462856
77254
ENSAPLT00000031433
19402813 - 19461477
58665
ENSAPLT00000025953
19387225 - 19462856
75632
ENSAPLT00000048195
19293286 - 19461477
168192