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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19498213_19498435_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19498213 - 19498435
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CATTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATCTCTATAACA
Flanking Amino Acid:
TLVGSQHLNYQPDFNENKVY
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
78.3
37.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.2
0.81
0.8
80.7
30.8
Minor 5ss
39.3
-1.2
2.9
56
41.5
Minor BPS
66
0.5
1.6
74.53
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628