Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19504526_19507213_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19504526 - 19507213

Intron Length:

2688

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGTAC

5'SS Class:

major

3'SS Sequence:

TCCTCTATTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

GTTTCCTCTATT

Flanking Amino Acid:

ITGGNVIVEARQKLALIDVQ

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.3

0.48

1.1

38.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

81.4

0.71

0.8

73.2

35.9

Minor 5ss

-1.6

3.4

49.9

46.7

Minor BPS

61.6

0.44

1.9

81.38

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003957

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004163

19497847 - 19540474

42628