Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19507365_19507459_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19507365 - 19507459

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATTA

5'SS Class:

strong_major

3'SS Sequence:

TATCTTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GCATTTTTATCT

Flanking Amino Acid:

LFKIKDVESQIEESLQDLVE

Intron Amino Acid Position:

311

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

80.2

28.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

83.4

0.75

0.8

77.8

30.5

Minor 5ss

40.9

-1

3.2

48.2

Minor BPS

56.6

0.28

1.6

68.63

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003957

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004163

19497847 - 19540474

42628