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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19507897_19508996_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19507897 - 19508996
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGGATTC
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TAACAAATAACT
Flanking Amino Acid:
PTRDVMEEATLIMKKHCPRS
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.1
60.9
39.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.1
0.77
0.7
77
31.7
Minor 5ss
43.3
-0.7
3.4
64.4
41.2
Minor BPS
46.5
-0.1
2
67.89
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628