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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19513164_19513248_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19513164 - 19513248
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGGAAA
5'SS Class:
major
3'SS Sequence:
TGATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGCTCACTGATT
Flanking Amino Acid:
GRSTAPDLQVMASACRMAVR
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
76.9
33.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86.5
0.82
0.8
84.8
35.6
Minor 5ss
34
-1.8
3.2
44.1
43.8
Minor BPS
48.8
-0
1.9
69.92
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628