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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19513347_19517565_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19513347 - 19517565
Intron Length:
4219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
GTTTTACTACCT
Flanking Amino Acid:
SKVFRFSMFKEFLMSGLAAK
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
87.8
0.85
0.7
85.7
28.5
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
47.8
-0
2.1
74.4
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628