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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19517878_19517964_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19517878 - 19517964
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATTAT
5'SS Class:
major
3'SS Sequence:
TCTTCTCATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTCTTCTCATGC
Flanking Amino Acid:
DYDFREILKTLSDWKALPSD
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
77.7
33
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.1
0.72
0.8
77.6
30
Minor 5ss
41.7
-0.9
3
58.4
46.2
Minor BPS
44.2
-0.4
2
53.26
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628