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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19519036_19524075_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19519036 - 19524075
Intron Length:
5040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTCCCTTTAATG
Flanking Amino Acid:
CKEETNLFTVRSKTFAVTRN
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.4
0.75
0.8
77.6
36.5
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
69.3
0.47
1.3
68.31
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628