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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19526114_19526970_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19526114 - 19526970
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCAATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTACTACTAACA
Flanking Amino Acid:
EHALRMSLKPVYTEAPIEKI
Intron Amino Acid Position:
1032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
72.3
0.5
1
67.4
42.7
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
46.8
-0.2
1.9
59.54
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628