Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19527144_19527812_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19527144 - 19527812

Intron Length:

669

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGCTG

5'SS Class:

major

3'SS Sequence:

TGTAATTGACTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATGTAT

U12 Branch Point Sequence:

GTGTAATTGACT

Flanking Amino Acid:

KILDETVDDQGIRKSRSSSS

Intron Amino Acid Position:

1090

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.5

0.44

1.1

57.3

Major BPS

63.7

0.34

1.4

63.7

43.9

Major PPT

58.6

0.19

1.1

51.9

46.6

Minor 5ss

33.4

-1.9

3.6

47.4

Minor BPS

0.24

1.9

74.47

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003957

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004163

19497847 - 19540474

42628