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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19528428_19528510_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19528428 - 19528510
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAAATTT
5'SS Class:
major
3'SS Sequence:
TGGAATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATTTTGGAATT
Flanking Amino Acid:
HSSYDLSTKWESHLPKVYRL
Intron Amino Acid Position:
1295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
74.9
36.1
Major BPS
80
0.75
1
78.6
31
Major PPT
72
0.49
1
61.9
48.1
Minor 5ss
42.8
-0.8
3.3
56.5
47.7
Minor BPS
49.2
0.02
2
73.08
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628