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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19531933_19532414_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19531933 - 19532414
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTAAT
5'SS Class:
major
3'SS Sequence:
TATTTATCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTATTTATCT
Flanking Amino Acid:
LPSWIKKTSTTFMQYVPGAA
Intron Amino Acid Position:
1509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
79.7
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.65
0.8
71.3
39.5
Minor 5ss
44.9
-0.6
2.6
58.7
39.4
Minor BPS
62.1
0.46
1.8
80.49
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628