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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19532554_19533771_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19532554 - 19533771
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
TCTACTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTATCTTAATG
Flanking Amino Acid:
TIDTVIKVPGVTLYYQGLRM
Intron Amino Acid Position:
1556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
72.3
37.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.5
0.82
0.7
84.2
30.5
Minor 5ss
42.9
-0.8
3.1
52.3
45
Minor BPS
74.5
0.63
1.3
75.63
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628