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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19536114_19537314_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19536114 - 19537314
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTAACTAACT
Flanking Amino Acid:
WVLLEETCSGGCKLQRSYVK
Intron Amino Acid Position:
1781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.2
0.72
0.7
81.3
23.7
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
59.2
0.37
2.1
87.61
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003957
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004163
19497847 - 19540474
42628