Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19537477_19540159_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19537477 - 19540159

Intron Length:

2683

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGATAT

5'SS Class:

strong_major

3'SS Sequence:

GCTCTTCTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAA

U12 Branch Point Sequence:

TGTTCGTTAACA

Flanking Amino Acid:

VKVGFHCFPKDTAVSLLEWQ

Intron Amino Acid Position:

1835

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

0.9

79.4

29.5

Major BPS

61.8

0.29

1.1

69.7

35.6

Major PPT

72.5

0.51

68.1

37.6

Minor 5ss

45.7

-0.5

2.9

64.3

47.2

Minor BPS

72.3

0.7

84.27

35.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003957

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004163

19497847 - 19540474

42628