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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19558517_19605510_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19558517 - 19605510
Intron Length:
46994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGCAGCA
5'SS Class:
weak_major
3'SS Sequence:
GACTGGTTGTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGCAAT
U12 Branch Point Sequence:
TTTGCTGGAATT
Flanking Amino Acid:
ELSSIKNSLKVFIDNQNVSK
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.8
0.11
1.4
51.7
39.7
Major BPS
53
0.07
1.4
62.5
41.7
Major PPT
49.6
-0
1.2
52
46
Minor 5ss
31.2
-2.1
3.4
40.2
45.4
Minor BPS
49.3
0.03
2.2
76.06
41.4

Associated Gene:

Gene:
PTGFR
Ensembl Gene ID:
ENSAPLG00000005684
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044921
19556739 - 19621996
65258