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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19605742_19621148_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19605742 - 19621148
Intron Length:
15407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATATAATT
Flanking Amino Acid:
VSCICWSPFLVTMARIGINA
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.7
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.7
0.78
0.8
81.6
35
Minor 5ss
31.8
-2.1
3.3
40.1
39.9
Minor BPS
64
0.52
1.7
85.84
34

Associated Gene:

Gene:
PTGFR
Ensembl Gene ID:
ENSAPLG00000005684
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035213
19605436 - 19660444
55009
ENSAPLT00000030861
19605436 - 19697801
92366
ENSAPLT00000005872
19605436 - 19622671
17236
ENSAPLT00000044921
19556739 - 19621996
65258