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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1962870_1968807_F

Intron Information:

Intron Rank:
138655
Intron Class:
major
Intron Phase:
Intron Coordinates:
1962870 - 1968807
Intron Length:
5938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAA
U12 Branch Point Sequence:
CAGAATAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
56.5
0.16
0.9
63.3
29.1
Major PPT
95.2
1.02
0.5
91.6
19.5
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
39.7
-0.7
1.9
51.47
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024645
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019737
1961262 - 1968858
7597