About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1971585_1973881_F

Intron Information:

Intron Rank:
138657
Intron Class:
major
Intron Phase:
Intron Coordinates:
1971585 - 1973881
Intron Length:
2297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGTACT
5'SS Class:
major
3'SS Sequence:
TTCACCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
75.9
39.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.7
0.71
0.8
73
37.2
Minor 5ss
37.8
-1.4
3
53
43.7
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024645
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028727
1968541 - 1975288
6748