Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19724175_19732913_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19724175 - 19732913

Intron Length:

8739

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGTTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATAATTTTAATG

Flanking Amino Acid:

TYMGIRDIELAATMVEAGRD

Intron Amino Acid Position:

445

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.9

1.06

0.6

14.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

82.9

0.74

0.8

81.2

36.5

Minor 5ss

40.7

-1

57.8

46.8

Minor BPS

0.14

1.3

58.71

37.4

Associated Gene:

Gene:

GIPC2

Ensembl Gene ID:

ENSAPLG00000005690

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005888

19724020 - 19748277

24258