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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19736985_19740468_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19736985 - 19740468
Intron Length:
3484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
DNGAGCAFIKRIKEGSLMDQ
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.4
0.75
0.8
78.5
33.7
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
GIPC2
Ensembl Gene ID:
ENSAPLG00000005690
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005888
19724020 - 19748277
24258