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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1975622_1981284_F

Intron Information:

Intron Rank:
138662
Intron Class:
major
Intron Phase:
Intron Coordinates:
1975622 - 1981284
Intron Length:
5663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
AATTCCACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
73.2
39.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72
0.49
0.9
64.2
36.8
Minor 5ss
40.1
-1.1
2.8
44.4
43.5
Minor BPS
72
0.77
1.4
84.52
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024645
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044055
1973851 - 1981806
7956