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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19792709_19792790_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19792709 - 19792790
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGATGTTTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTCACTTGATG
Flanking Amino Acid:
YNPGPPGPAPHGPPAPYAPQ
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
75
0.62
1
65.3
41.5
Major PPT
74.9
0.56
0.9
69
41.8
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
62.1
0.24
1.6
69.27
38

Associated Gene:

Gene:
FUBP1
Ensembl Gene ID:
ENSAPLG00000005965
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006272
19781207 - 19801135
19929