About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19792871_19795932_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19792871 - 19795932
Intron Length:
3062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTGTTTCATA
Flanking Amino Acid:
HWQPPNPPDPGKPGTDPNSA
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.9
0.76
0.7
80.1
32
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
54.6
0.14
2.1
74.34
38.4

Associated Gene:

Gene:
FUBP1
Ensembl Gene ID:
ENSAPLG00000005965
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006272
19781207 - 19801135
19929