Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19838485_19839104_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19838485 - 19839104

Intron Length:

620

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TTACATCACCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTGTCTCTAATT

Flanking Amino Acid:

VLKQKRQQMKVPDGFFAHFY

Intron Amino Acid Position:

491

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

82.3

32.2

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

63.2

0.3

0.9

55.5

39.9

Minor 5ss

40.5

-1.1

2.8

44.2

Minor BPS

68.2

0.65

1.6

84.28

36.9

Associated Gene:

Gene:

MIGA1

Ensembl Gene ID:

ENSAPLG00000006900

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025200

19837310 - 19875857

38548

ENSAPLT00000007183

19837310 - 19875857

38548