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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19840616_19840738_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19840616 - 19840738
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
GTTTGCTTGACA
Flanking Amino Acid:
LSALIVRARKNPKKFEDVFD
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
33.7
Major BPS
74.2
0.6
1
67
39.4
Major PPT
85.6
0.8
0.7
80.9
30.6
Minor 5ss
31
-2.2
3.4
42.5
44.5
Minor BPS
69.3
0.6
1.8
79.38
36.8

Associated Gene:

Gene:
MIGA1
Ensembl Gene ID:
ENSAPLG00000006900
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025200
19837310 - 19875857
38548
ENSAPLT00000007183
19837310 - 19875857
38548