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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19850060_19869830_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19850060 - 19869830
Intron Length:
19771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTATTTTAAAG
Flanking Amino Acid:
SDPASLANDIDKNTDITVKD
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.7
0.56
1.1
74.8
38.9
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
63.9
0.3
1.5
68.85
38.6

Associated Gene:

Gene:
MIGA1
Ensembl Gene ID:
ENSAPLG00000006900
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025200
19837310 - 19875857
38548
ENSAPLT00000007183
19837310 - 19875857
38548