Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19873610_19875683_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19873610 - 19875683

Intron Length:

2074

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATATAT

5'SS Class:

strong_major

3'SS Sequence:

CTTGTATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTCAT

U12 Branch Point Sequence:

TACTCTTGTATT

Flanking Amino Acid:

PLSWYYSFIQIKLSPGLKKL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

79.6

29.2

Major BPS

68.2

0.45

1.1

69.4

37.7

Major PPT

84.1

0.77

0.8

81.1

35.5

Minor 5ss

39.7

-1.2

3.1

56.3

47.9

Minor BPS

50.5

0.1

1.8

69.43

42.1

Associated Gene:

Gene:

MIGA1

Ensembl Gene ID:

ENSAPLG00000006900

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025200

19837310 - 19875857

38548

ENSAPLT00000007183

19837310 - 19875857

38548