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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19881913_19882928_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19881913 - 19882928
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATTTAACA
Flanking Amino Acid:
TKEELIQKSHGTCQDCKVRG
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.1
0.63
1
73.7
40.2
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
71.4
0.67
1.5
81.25
33.7

Associated Gene:

Gene:
USP33
Ensembl Gene ID:
ENSAPLG00000007027
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039988
19881778 - 19911391
29614
ENSAPLT00000027841
19877207 - 19911391
34185
ENSAPLT00000007386
19881778 - 19912420
30643
ENSAPLT00000042466
19877207 - 19911391
34185