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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19882983_19885042_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19882983 - 19885042
Intron Length:
2060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTTGCTCAACA
Flanking Amino Acid:
RGPNLWACLENRCTYVGCGE
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.8
0.56
0.9
69.9
35.4
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
61.8
0.37
2
75.44
42.2

Associated Gene:

Gene:
USP33
Ensembl Gene ID:
ENSAPLG00000007027
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042466
19877207 - 19911391
34185
ENSAPLT00000027841
19877207 - 19911391
34185
ENSAPLT00000007386
19881778 - 19912420
30643