About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19885106_19888206_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19885106 - 19888206
Intron Length:
3101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TATCGTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCG
Flanking Amino Acid:
HVDHSTIHSQETKHCLTVNL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.9
0.54
0.8
70.8
35.8
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
61.7
0.23
1.6
67.28
40.8

Associated Gene:

Gene:
USP33
Ensembl Gene ID:
ENSAPLG00000007027
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039988
19881778 - 19911391
29614
ENSAPLT00000027841
19877207 - 19911391
34185
ENSAPLT00000007386
19881778 - 19912420
30643
ENSAPLT00000042466
19877207 - 19911391
34185