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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19892337_19893112_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19892337 - 19893112
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTATTTGAAAC
Flanking Amino Acid:
KLMTELWHKSRPGSVVPTGL
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
70.2
36.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
44.6
-0.6
3.2
64.1
47.4
Minor BPS
50
-0
1.5
61.86
36.9

Associated Gene:

Gene:
USP33
Ensembl Gene ID:
ENSAPLG00000007027
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039988
19881778 - 19911391
29614
ENSAPLT00000027841
19877207 - 19911391
34185
ENSAPLT00000007386
19881778 - 19912420
30643
ENSAPLT00000042466
19877207 - 19911391
34185