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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19896027_19897584_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19896027 - 19897584
Intron Length:
1558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGTC
5'SS Class:
major
3'SS Sequence:
TGTCCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
CTTACATTAAAT
Flanking Amino Acid:
CASLTPVHKKVSTVSSPKRK
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
72.3
37.8
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
82.8
0.74
0.8
76.3
32.4
Minor 5ss
38.8
-1.3
3.1
52.5
44.7
Minor BPS
61.6
0.44
1.8
79.62
41.7

Associated Gene:

Gene:
USP33
Ensembl Gene ID:
ENSAPLG00000007027
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039988
19881778 - 19911391
29614
ENSAPLT00000027841
19877207 - 19911391
34185
ENSAPLT00000007386
19881778 - 19912420
30643
ENSAPLT00000042466
19877207 - 19911391
34185