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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19897698_19898706_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19897698 - 19898706
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATGCTTAACT
Flanking Amino Acid:
SSVQCLTCDRLSVTLETFQD
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
91.1
0.92
0.6
89.5
19.1
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
78.3
0.97
1.7
93.01
35.4

Associated Gene:

Gene:
USP33
Ensembl Gene ID:
ENSAPLG00000007027
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042466
19877207 - 19911391
34185
ENSAPLT00000039988
19881778 - 19911391
29614
ENSAPLT00000027841
19877207 - 19911391
34185
ENSAPLT00000007386
19881778 - 19912420
30643