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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19899085_19899666_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19899085 - 19899666
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TCAATATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTTCTCTCAATA
Flanking Amino Acid:
AAFFARDELKGDNMYSCGRC
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.9
41.1
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
76.3
0.59
0.9
69.7
40.2
Minor 5ss
31.7
-2.1
3.4
39.1
46.1
Minor BPS
66.5
0.52
1.5
76.84
33.9

Associated Gene:

Gene:
USP33
Ensembl Gene ID:
ENSAPLG00000007027
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027841
19877207 - 19911391
34185
ENSAPLT00000007386
19881778 - 19912420
30643
ENSAPLT00000042466
19877207 - 19911391
34185
ENSAPLT00000039988
19881778 - 19911391
29614