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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19900592_19901343_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19900592 - 19901343
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTTA
5'SS Class:
major
3'SS Sequence:
ATCCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTTTCTTGAGC
Flanking Amino Acid:
KFCKVQKFPEILCIHLKRFR
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
68.7
38.5
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
82.5
0.73
0.8
76.3
31.7
Minor 5ss
39.3
-1.2
3.5
55.9
48.2
Minor BPS
70.9
0.64
1.6
81.07
33.8

Associated Gene:

Gene:
USP33
Ensembl Gene ID:
ENSAPLG00000007027
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027841
19877207 - 19911391
34185
ENSAPLT00000007386
19881778 - 19912420
30643
ENSAPLT00000042466
19877207 - 19911391
34185
ENSAPLT00000039988
19881778 - 19911391
29614