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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19905033_19906360_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19905033 - 19906360
Intron Length:
1328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACTG
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
ATTTTAAGAAAA
Flanking Amino Acid:
SNNDFLCMHGGVPPHKANFI
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
71.5
40.2
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
79.8
0.67
0.9
73.5
37
Minor 5ss
30.1
-2.3
3.1
38.3
46.6
Minor BPS
45
-0.3
2
62.43
36.5

Associated Gene:

Gene:
USP33
Ensembl Gene ID:
ENSAPLG00000007027
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042466
19877207 - 19911391
34185
ENSAPLT00000039988
19881778 - 19911391
29614
ENSAPLT00000027841
19877207 - 19911391
34185
ENSAPLT00000007386
19881778 - 19912420
30643