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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1992598_1996874_F

Intron Information:

Intron Rank:
128347
Intron Class:
major
Intron Phase:
Intron Coordinates:
1992598 - 1996874
Intron Length:
4277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGTT
5'SS Class:
major
3'SS Sequence:
TACTTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
77.9
36.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.3
0.73
0.8
80.6
31
Minor 5ss
51
0.03
2.9
75.5
40.6
Minor BPS
63.3
0.49
1.6
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019129
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026855
1992596 - 2014922
22327