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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19952887_19953088_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
19952887 - 19953088
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAC
5'SS Class:
major
3'SS Sequence:
CTTTTCTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTTTTCTCAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
73
32.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.3
0.7
0.8
77.6
29.8
Minor 5ss
46.6
-0.3
2.5
61.2
43.7
Minor BPS
71.2
0.66
1.5
79.1
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007892
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008212
19952798 - 19986462
33665