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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19958658_19971481_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19958658 - 19971481
Intron Length:
12824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATGTGTA
5'SS Class:
major
3'SS Sequence:
TTTGTCTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTAGTGAGAT
Flanking Amino Acid:
SDHVALKHNKDYQRLLQTIA
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
67.8
37.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.5
0.73
0.7
78.1
30.8
Minor 5ss
43.6
-0.7
3.1
53.6
44.8
Minor BPS
43.3
-0.4
2.4
71.58
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007892
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008212
19952798 - 19986462
33665