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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19971621_19972934_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19971621 - 19972934
Intron Length:
1314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCGA
5'SS Class:
major
3'SS Sequence:
CATTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTGCTTATCA
Flanking Amino Acid:
IGFVERLQKKVDMGLPYPQR
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
63.5
42.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89.9
0.9
0.7
88.2
28.6
Minor 5ss
39.7
-1.1
2.8
50.8
45.4
Minor BPS
61.3
0.35
2
76.09
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007892
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008212
19952798 - 19986462
33665