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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19973284_19973574_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19973284 - 19973574
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTGTC
5'SS Class:
major
3'SS Sequence:
TATATTTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTACTATATTT
Flanking Amino Acid:
PEGSTSSRPQMIRGRLCDET
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
72.5
37.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.9
0.45
1.1
66.7
43.5
Minor 5ss
35.9
-1.6
3.5
52.1
45.1
Minor BPS
48.7
-0
1.9
70.37
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007892
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008212
19952798 - 19986462
33665