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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19973647_19973823_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19973647 - 19973823
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGA
5'SS Class:
major
3'SS Sequence:
GTGCTCAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TTGTGCTCAATT
Flanking Amino Acid:
FNQLWTVEEQKKLEQLLLKY
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
65.9
39.8
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
63.1
0.3
1
60.2
40.6
Minor 5ss
28.7
-2.4
3.5
38.6
46.4
Minor BPS
59.9
0.39
2
79.94
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007892
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008212
19952798 - 19986462
33665