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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19985955_19986317_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19985955 - 19986317
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGACTTTTAAAC
Flanking Amino Acid:
SLDFCDSCSDCLHETEIHKE
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.9
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.7
0.83
0.7
81
24.1
Minor 5ss
34.4
-1.8
2.9
39.9
40.3
Minor BPS
57.1
0.2
1.4
62.56
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007892
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008212
19952798 - 19986462
33665