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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20000475_20003846_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20000475 - 20003846
Intron Length:
3372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACCATG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GTTTGCATACTT
Flanking Amino Acid:
LNEAKEFESKIGEPKLVFCL
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.2
68.8
43.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
43.1
-0.8
2.9
56.9
47.4
Minor BPS
47.8
-0
2.2
73.42
43.7

Associated Gene:

Gene:
AK5
Ensembl Gene ID:
ENSAPLG00000008100
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008474
19990637 - 20085448
94812