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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20005122_20014719_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20005122 - 20014719
Intron Length:
9598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTACCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCCCTTACCA
Flanking Amino Acid:
LRKSNIIFVVGGPGSGKGSQ
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
64.2
0.32
1
63.6
36.2
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
75
0.78
1.6
85.03
34.5

Associated Gene:

Gene:
AK5
Ensembl Gene ID:
ENSAPLG00000008100
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008474
19990637 - 20085448
94812