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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20014765_20015771_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20014765 - 20015771
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCT
Flanking Amino Acid:
SSFSGYESTGDFSEDLRKSN
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.6
0.67
0.8
78.8
33.7
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
68.7
0.67
1.5
84.06
36.9

Associated Gene:

Gene:
AK5
Ensembl Gene ID:
ENSAPLG00000008100
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008474
19990637 - 20085448
94812