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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20015815_20030355_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20015815 - 20030355
Intron Length:
14541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GCTTAATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATTGCTTAATT
Flanking Amino Acid:
GYTEFDFEDQEEDQSSFSGY
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
68.7
0.42
1
62.4
42.1
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
70.6
0.72
1.7
83.61
37.4

Associated Gene:

Gene:
AK5
Ensembl Gene ID:
ENSAPLG00000008100
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008474
19990637 - 20085448
94812